PCR_DGGE技术用于湖泊沉积物中微生物群落结构多样性研究.pdfVIP

26 11 Vol . 26, No. 11 2006 11 ACTA ECOLOGICA SINICA Nov. , 2006 PCRDGGE * 赵兴青, 杨柳燕 , 陈 灿, 肖 琳, 蒋丽娟, 马 , 朱昊巍, 于振洋, 尹大强 ( , , 210093) : PCRDGGE , , 16S DNA PCR 626 bp, 16S DNA V3~ V5 20 , DGGE , , DGGE , , 5 , DGGE 7 , , 5 Genebank 99% , 2 96% 93% , 2 : ; ; ( DGGE) ; 16S DNA; :2006) : Q938 : A Study on the microbial diversity in lake sediments by the method of PCRDGGE * ZHAO XingQing, YANG LiuYan , CHEN Can, XIAO Lin, JIANG LiJuan, MA Zhe, ZHU HaoWei, YU Zhen Yang, YIN DaQiang ( StateK ey Laboratory of Pollution Control and Resource Reuse , School of the Environment , Nanj ing University , Nanj ing 210093, China) . Acta Ecologica Sinica 2006 26( 11) : 3610~ 3616. Abstract: As a new technique fo DNA finge p int ing, denatu ing g adient gel elect opho esis ( DGGE) can be used fo mic obial dive sity analysis in envi onmental samples. In this study, PCRDGGE w as applied to analyze the mic obial communities in lake sediments. Sediment samples f om seven locations in th ee lakes we e collected and thei genomic DNA w as di ectly ext acted. The DNA yield of sediments of Lake Xuanwu and Lake Mochou was high ( 10gg) , while that of sediments in Lake Taihu was elatively low . Afte DNA pu ification, the 16S RNA genes ( V3 to V5 egion) we e amplified with two unive sal p ime s ( F341GC and R907) . These amplified DNA f agments w e e sepa ated by pa allel DGGE. The DGGE p ofiles indicate diffe ent bands patte ns fo diffe ent samples. The e a e five common bands in all lake sediment samples, which indicate that the e a e simila ities among the populations of mic oo ganisms that exist in all lake sedim