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Automated Determination of Subcellular Location from Confocal
Computational Biology at Carnegie Mellon University A Quick Tour Jaime Carbonell Carnegie Mellon University December, 2008 Computational Biology at CMU: Educational History 1987 Undergraduate program in Computational Biology established 1991 Howard Hughes Medical Institute grant to build undergrad curriculum 2000 M.S. Program in Computational Biology established 2005 Joint CMU U. of Pittsburgh PHD Program in Computational Biology Computational Biology at CMU: History 2002 NSF large ITR grant CMU PI: Reddy Carbonell with U, Pitt, MIT, Boston U, NRC Canada Computational Biolinguistics 2003 NSF large ITR grant CMU PI: Murphy with UCSB, Berkeley, MIT Bioimage Informatics 2004-2008 10 small grants from NSF, NIH, Merck, Gates on: Computational proteomics, viral evolution, HIV-human interactome, … Joint CMU-Pitt Ph.D. Program in Computational Biology Curriculum for Comp Bio PhD Core graduate courses Molecular Biology Biochemistry Biophysics Advanced Algorithms Language Tech. Machine Learning Methods Computational Genomics Computational Structural Biology Cellular and Systems Modeling Curriculum Elective Courses Computational Genomics Computational Structural Biology Cellular and Systems Modeling Bioimage Informatics Computational Neurobiology Advanced Statistical Learning Methods Example Books Used Teaching Advising Faculty 30 faculty from CMU 11 Computer Science 11.5 Biology and Chemistry 3.5 Bio-Engineering 3 Statistics and Mathematics 1 Business School 36 faculty from Pitt 19 Medical School 17 Biology, Chemistry, Physics Faculty: Computational Genomics Ziv Bar-Joseph* Jaime Carbonell Marie Dannie Durand* Jonathan Minden Ramamoorthi Ravi Kathryn Roeder Roni Rosenfeld Larry Wasserman Eric Xing* Faculty: Computational Structural Biology Proteomics Michael Erdmann Maria Kurnikova* Chris Langmead* John Nagle Gordon Rule Robert Swendsen Jaime Carbonell* Faculty: Cellular and Systems Modeling Ziv Bar-Joseph* Omar Ghattas Philip LeDuc Russell Schwartz* Joel Stiles*
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