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a computational clonal analysis of the developing mouse limb bud计算克隆分析发展中鼠标肢芽
A Computational Clonal Analysis of the Developing
Mouse Limb Bud
1 ´ 2 2 1,3
Luciano Marcon *, Carlos G. Arques , Miguel S. Torres , James Sharpe *
´
1 EMBL-CRG Systems Biology Research Unit, Center for Genomic Regulation (CRG), Universitat Pompeu Fabra, Barcelona, Spain, 2 Departamento de Biologıa del Desarrollo
Cardiovascular, Centro Nacional de Investigaciones Cardiovasculares (CNIC), Instituto de Salud Carlos III, Madrid, Spain, 3 ICREA Professor, Centre for Genomic Regulation
(CRG), Universitat Pompeu Fabra, Barcelona, Spain
Abstract
A comprehensive spatio-temporal description of the tissue movements underlying organogenesis would be an extremely
useful resource to developmental biology. Clonal analysis and fate mappings are popular experiments to study tissue
movement during morphogenesis. Such experiments allow cell populations to be labeled at an early stage of development
and to follow their spatial evolution over time. However, disentangling the cumulative effects of the multiple events
responsible for the expansion of the labeled cell population is not always straightforward. To overcome this problem, we
develop a novel computational method that combines accurate quantification of 2D limb bud morphologies and growth
modeling to analyze mouse clonal data of early limb development. Firstly, we explore various tissue movements that match
experimental limb bud shape changes. Secondly, by comparing computational clones with newly generated mouse clonal
data we are able to choose and characterize the tissue movement map that better matches ex
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