a quick guide for developing effective bioinformatics programming skills发展有效的生物信息学编程技能的快速指南.pdfVIP
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a quick guide for developing effective bioinformatics programming skills发展有效的生物信息学编程技能的快速指南
Education
A Quick Guide for Developing Effective Bioinformatics
Programming Skills
Joel T. Dudley1,2,3*, Atul J. Butte2,3
1 Program in Biomedical Informatics, Stanford University School of Medicine, Stanford, California, United States of America, 2 Department of Pediatrics, Stanford University
School of Medicine, Stanford, California, United States of America, 3 Lucile Packard Children’s Hospital, Palo Alto, California, United States of America
Introduction an effective user of a programming greatly from the many software tools,
language, it is provident to not only gain libraries, and educational materials avail-
Bioinformatics programming skills are basic proficiency in a diversity of languag- able supporting the use of Perl and Python
becoming a necessity across many facets of es but also to appropriate the time and for bioinformatics [13–17].
biology and medicine, owed in part to the energy to gain mastery in at least a single In many cases, modern scripting languages
continuing explosion of biological data language. With programming language can be ‘‘bridged’’ to other languages such
aggregation and the complexity and scale mastery comes knowledge and access to that one is able to leverage the advanced
of questions now being addressed through advanced language features and libraries, features of other languages without abandon-
modern bioinformatics. Although many more efficient programming, and less time ing the scripting language environment.
are now receiving formal training in spent reading manuals and making novice
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