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ARTICLE
Received 29 Jun 2015 | Accepted 16 Nov 2015 | Published 21 Dec 2015 DOI: 10.1038/ncomms10221 OPEN
H19 lncRNA alters DNA methylation genome wide
by regulating S-adenosylhomocysteine hydrolase
1,2, 1,3, 1,4, 1,5 1,6 7
Jichun Zhou *, Lihua Yang *, Tianyu Zhong *, Martin Mueller , Yi Men , Na Zhang ,
1,8 9 9 9 10 7
Juanke Xie , Karolyn Giang , Hunter Chung , Xueguang Sun , Lingeng Lu , Gordon G. Carmichael ,
Hugh S. Taylor1 Yingqun Huang1
DNA methylation is essential for mammalian development and physiology. Here we
report that the developmentally regulated H19 lncRNA binds to and inhibits S-adenosylho-
mocysteine hydrolase (SAHH), the only mammalian enzyme capable of hydrolysing
S-adenosylhomocysteine (SAH). SAH is a potent feedback inhibitor of S-adenosylmethionine
(SAM)-dependent methyltransferases that methylate diverse cellular components, including
DNA, RNA, proteins, lipids and neurotransmitters. We show that H19 knockdown activates
SAHH, leading to increased DNMT3B-mediated methylation of an lncRNA-encoding gene
Nctc1 within the Igf2-H19-Nctc1 locus. Genome-wide methylation profiling reveals methylation
changes at numerous gene loci consistent with SAHH modulation by H19. Our results
uncover an unanticipated regulatory circuit involving broad epigenetic alterations by a single
abundantly expressed lncRNA that may underlie gene methylation dynamics of development
and diseases and suggest that this mode of regulation may extend to other cellular
components.
1 Department of Obstetrics, Gynecology, an
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