Gbrowse在windows安装.docx

Gbrowse在windows安装准备工作ActivePerl/Products/Download/Download.plex?id=ActivePerlApache/download.cgi（可下必威体育精装版版本）MySQL/downloads/mysql（可下必威体育精装版版本）gbrowse_netinstall.pl（在线安装perl脚本，需要perl环境）/viewvc/gmod/Generic-Genome-Browser/trunk/bin/gbrowse_netinstall.pl注：ActivePerl 需要下version 5.8.XX版，其它版本暂不支持安装ActivePerlApacheMysql(可先不安)gbrowse_netinstall.pl (cmd窗口调用,命令：perl gbrowse_netinstall.pl)注：运行过程中可能会出现下列错误：“Couldn’t installnmake.exe. No such file such file or directory at gbrowse_netinstall.pl line 150. Begin failed--Compilation aborted at gbrowse_netinstall.pl line 158”解决办法：出现上错误时，可选择手动将150行“#”注释掉，重新运行即可！安装后可以正常使用。安装过程需要根据网速，大概半小时左右！调试安装完毕浏览器出现下界面表示初步成功！如果点击example database 下面的链接能正常显示（恭喜你，成功了）通常是如下显示，不正常显示：示例如下图：问题解决：修改C:\Program Files\Apache Software Foundation\Apache2.2\cgi-bin目录下“gbrowse”文件，将“#!C:/Perl/bin/perl.exe -w”“$CONF_DIR = C:/Program Files/Apache Software Foundation/Apache2.2/conf/gbrowse.conf;”中的“\”做替换即可。调试完毕后，单击“http://localhost/cgi-bin/gbrowse/yeast”测试ced with the %09 URL escape. 文件目录及程序运行说明下文目录结构均在activeperl 、apache 在默认情况下安装程序运行需准备文件及文件所在目录：C:\Program Files\Apache Software Foundation\Apache2.2\conf\gbrowse.conf目录下：XXXX.conf 配置文件通过配置文件到相应目录取数据库。C:\Program Files\Apache Software Foundation\Apache2.2\htdocs\gbrowse\databases目录下取数据文件程序尝试使用简记：Gbrowse 页面展示文件相关文件目录：C:\Program Files\Apache Software Foundation\Apache2.2\htdocs/gbrowseGbrowse配置文件C:\Program Files\Apache Software Foundation\Apache2.2\conf/gbrowse.confGBrowse CGI (web) scripts C:\Program Files\Apache Software Foundation\Apache2.2\cgi-bin/gbrowseC:\Program Files\Apache Software Foundation\Apache2.2\cgi-bin/gbrowse_imgC:\Program Files\Apache Software Foundation\Apache2.2\cgi-bin/gbrowse_detailsC:\Program Files\Apache Software Foundation\Apache2.2\cgi-bin/gbrowse_estC:\Program Files\Apache Software Foundation\Apache2.2\cgi-bin/gbrowse_synC:\Program Files\Apache Software Foundation\Apache2.2\cgi-bin/gbrowse_moby注：当前版本数据格式.gff3，.gff不支持；支持格式如下：##gff-version 3##Note: See # file: volvox1.gff3ctgAexamplecontig150000...Name=