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NYU Department of Chemistry
Bruker autoflex maX MALDI-TOF/TOF Mass Spec User Manual
Author: Joel A. Tang Last Modified: 03/25/2022
Sample Preparation
MALDI Target Types
1. Steel Targets - Standard target for fast, simple, and robust MALDI preparation of virtually any type of sample.
a. Ground steel targets have a highly regular fine structure on the plate surface, enabling highly
homogenous co-crystallized preparations (dried droplet method).
b. Polished steel targets are virtually free of any surface structure and provide maximum flatness for
MALDI thin-layer preparations.
2. Anchor Chip Standard Targets (Ø = 800 μm) - Preferred target type for high-throughput MALDI measurements
that are performed in unattended, fully automatic mode. Such applications include MALDI peptide mapping and
subsequent MS/MS sequencing of 2D gel digests and LC- MALDI analyses of complex peptide mixtures.
3. Small Anchor Targets (Ø = 400μm) - Preferred target type for the preparation of oligonucleotides and similar
samples using 3-HPA as a matrix.
4. Pre-Spotted Anchor Chip Targets - Disposable MTP-sized MALDI targets pre-spotted with HCCA (a-cyano-4-
hydroxycinnamic acid) matrix. PAC targets are highly suitable for low- to medium complexity samples in gel- or
LC-based proteomics applications.
NOTE: Ground Steel plates are the most versatile and can accommodate a variety of samples. The following will refer to
Ground steel plates only. Consult the facility manager about other options and procedures or the Bruker MALDI
Preparation Protocols manual.
Matrix Sample Type Sample Matrix Solubilization Sample Preparation
Solvent
HCCA Peptides,
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